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020 _a9781071624456
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024 7 _a10.1007/978-1-0716-2445-6
_2doi
050 4 _aQH324.8
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082 0 4 _a570.28
_223
245 1 0 _aArchaea
_h[electronic resource] :
_bMethods and Protocols /
_cedited by Sébastien Ferreira-Cerca.
250 _a1st ed. 2022.
264 1 _aNew York, NY :
_bSpringer US :
_bImprint: Humana,
_c2022.
300 _aXIV, 549 p. 98 illus., 88 illus. in color.
_bonline resource.
336 _atext
_btxt
_2rdacontent
337 _acomputer
_bc
_2rdamedia
338 _aonline resource
_bcr
_2rdacarrier
347 _atext file
_bPDF
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490 1 _aMethods in Molecular Biology,
_x1940-6029 ;
_v2522
505 0 _aArchaea: a goldmine for molecular biologists and evolutionists -- Progress and challenges in archaeal genetic manipulation -- Genetic manipulation of Haloferax species -- CRISPR interference as a tool to Repress Gene Expression in Haloferax volcanii -- Transformation Techniques for the Anaerobic Hyperthermophile Thermococcus kodakarensis -- Genetic Methods and Construction of Chromosomal Mutations in Methanogenic Archaea -- An interdomain conjugation protocol for plasmid-DNA transfer into Methanothermobacter thermautotrophicus ΔH -- Methods for Markerless Gene Deletion and Plasmid-Based Expression in Sulfolobus acidocaldarius -- A Rapid Targeted Gene Inactivation Approach in Sulfolobus islandicus -- Transposon Insertion Mutagenesis in hyperthermophilic crenarchaeon Sulfolobus islandicus -- Reprogramming CRISPR-mediated RNA interference for silencing of essential genes in Sulfolobales -- Progress and challenges in archaeal molecular biology -- ChIP-seq Occupancy Mapping of the Archaeal Transcription Machinery -- Conversion of ribosome-protected mRNA to DNA and deep sequencing for ribosome profiling in Haloferax volcanii -- Small RNA-sequencing library preparation for the halophilic archaeon Haloferax volcanii -- Quantitative Mass Spectrometry by SILAC in Haloferax volcanii -- Proteome turnover analysis in Haloferax volcanii by a heavy isotope multilabelling approach -- Proteomic sample preparation and data analysis in line with the Archaeal Proteome -- In vivo protein crosslinking and co-immunoprecipitation in Haloferax volcanii -- Proteolytic activity assays in haloarchaea -- Carotenoids from Haloarchaea: Extraction, fractionation and characterization -- Metal nanoparticles biosynthesis using the halophilic archaeon Haloferax volcanii -- Simplified enzymatic synthesis of 2-keto-3-deoxy-D-gluconate from D-gluconate using the gluconate dehydratase from Thermoproteus tenax -- Progress and Challenges in Archaeal Cellular Biology Analysis -- Methods to Analyze Motility in Eury- And Crenarchaea -- Immersed Liquid Biofilm and Honeycomb Pattern Formations in Haloferax volcanii -- Cost-effective and Versatile Analysis of Archaeal Surface Adhesion Under Shaking and Standing Conditions -- Cell Adhesion and Biofilm Formation Analysis -- BrdU incorporation and labelling of nascent DNA to Investigate Archaeal Replication using super-resolution imaging -- Isolation, Purification, and Characterization of Membrane Vesicles from Haloarchaea -- Archaeal Viruses: Production of Virus Particles and Vesicle-Like Viruses and Purification Using Asymmetrical Flow Field-Flow Fractionation -- Progress and Challenges in Studying the Ecophysiology of Archaea -- Reconstruction of Archaeal Genomes Assembly from Short-Read Metagenomes -- Outreach: Accessible and Insightful Scientific Learning Experiences Using the Microorganism Haloferax volcanii.
520 _aThis volume provides an overview of well-established methods optimized for diverse archaeal model organisms and is a source of protocols facilitating access to the molecular and cellular biology characterization of these fascinating organisms. Chapters are divided into five parts detailing available genetic tools, molecular and cellular biology methods, strategies to study the ecophysiology of archaea, and classroom protocol. Each main thematic part is also introduced by future-oriented and authoritative primers. Written in the format of the highly successful Methods in Molecular Biology series, each chapter includes an introduction to the topic, lists necessary materials and reagents, includes tips on troubleshooting and known pitfalls, and step-by-step, readily reproducible protocols.Authoritative and cutting-edge, Archaea: Methods and Protocols aims to be a foundation for future studies and to be a source of inspiration for new investigations in the field.
650 0 _aBiological models.
650 1 4 _aBiological Models.
700 1 _aFerreira-Cerca, Sébastien.
_eeditor.
_4edt
_4http://id.loc.gov/vocabulary/relators/edt
710 2 _aSpringerLink (Online service)
773 0 _tSpringer Nature eBook
776 0 8 _iPrinted edition:
_z9781071624449
776 0 8 _iPrinted edition:
_z9781071624463
776 0 8 _iPrinted edition:
_z9781071624470
830 0 _aMethods in Molecular Biology,
_x1940-6029 ;
_v2522
856 4 0 _uhttps://doi.org/10.1007/978-1-0716-2445-6
912 _aZDB-2-PRO
999 _c8600
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