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020 _a9781493924745
_9978-1-4939-2474-5
024 7 _a10.1007/978-1-4939-2474-5
_2doi
050 4 _aQH573-671
072 7 _aPSF
_2bicssc
072 7 _aSCI017000
_2bisacsh
072 7 _aPSF
_2thema
082 0 4 _a571.6
_223
245 1 0 _aChromatin Protocols
_h[electronic resource] /
_cedited by Srikumar P. Chellappan.
250 _a3rd ed. 2015.
264 1 _aNew York, NY :
_bSpringer New York :
_bImprint: Humana,
_c2015.
300 _aXIV, 492 p. 74 illus., 36 illus. in color.
_bonline resource.
336 _atext
_btxt
_2rdacontent
337 _acomputer
_bc
_2rdamedia
338 _aonline resource
_bcr
_2rdacarrier
347 _atext file
_bPDF
_2rda
490 1 _aMethods in Molecular Biology,
_x1940-6029 ;
_v1288
505 0 _aBeads-on-a-String on a Bead: Reconstitution and Analysis of Chromatin on a Solid Support -- Preparation and Analysis of Positioned Mononucleosomes -- Chromatin Imaging with Time-Lapse Atomic Force Microscopy -- Isolation of Specific Genomic Regions and Identification of Associated Molecules by Engineered DNA-Binding Molecule-Mediated Chromatin Immunoprecipitation (enChIP) Using CRISPR -- Drug-Induced Premature Chromosome Condensation (PCC) Protocols: Cytogenetic Approaches in Mitotic Chromosome and Interphase Chromatin -- Analysis of Genomic Aberrations Using Comparative Genomic Hybridization of Metaphase Chromosomes -- Histone Deacetylase Activity Assay -- In Vitro Histone Demethylase Assays -- Integrated DNA Methylation and Chromatin Structural Analysis at Single-Molecule Resolution -- Determination of DNA Methylation Levels Using Illumina HumanMethylation450 BeadChips -- Investigation of Genomic Methylation Status Using Methylation Specific and Bisulfite Sequencing Polymerase Chain Reaction -- In Vitro and In Vivo Assays for Studying Histone Ubiquitination and Deubiquitination -- Immunostaining Analysis of Tissue Cultured Cells and Tissue Sections Using Phospho-Histone H3 (Serine 10) Antibody -- Identification and Characterization of Nonhistone Chromatin Proteins: Human Positive Coactivator 4 as a Candidate -- Methods to Study Transcription-Coupled Repair in Chromatin -- Analysis of DNA Replication Associated Chromatin Decondensation: In Vivo Assay for Understanding Chromatin Remodeling Mechanisms of Selected Proteins -- Non-Radioactive Assay Methods for the Assessment of Telomerase Activity and Telomere Length -- Detecting ATM Dependent Chromatin Modification in DNA Damage Response -- Imaging Local Deposition of Newly Synthesized Histones in UVC-Damaged Chromatin -- In Vitro Replication Assay with Mammalian Cell Extracts -- Fluorescent In Situ Hybridization on Comets: FISH Comet -- Methods to Study Histone Chaperone Function in Nucleosome Assembly and Chromatin Transcription -- Preparation of Mononucleosomal Templates for Analysis of Transcription with RNA Polymerase Using spFRET -- Transcriptome-Wide Identification of In Vivo Interactions Between RNAs and RNA-Binding Proteins by RIP and PAR-CLIP Assays -- Chromatin Immunoprecipitation Assays: Analyzing Transcription Factor Binding and Histone Modifications In Vivo -- ChIP on Chip and ChIP-Seq Assays: Genome-Wide Analysis of Transcription Factor Binding and Histone Modifications -- ChIP-on-Chip Analysis Methods for Affymetrix Tiling Arrays.
520 _aUpdated and revised, this thorough volume is organized such that it begins with techniques related to the study of chromatin structure. Protocols for reconstitution of chromatin on solid supports for analysis, preparation of positioned mononucleosomes, techniques to study premature chromatin condensation, and the use of comparative genomic hybridization to assess genomic aberration are included as well. Novel techniques for imaging chromatin using atomic force microscopy and the isolation of specific genomic regions using engineered DNA binding molecules generated by CRISPR are then examined. That section is followed by protocols to analyze DNA and histone modifications, while the third section includes methods to study DNA replication and repair, in the context of chromatin.  Last but not least, protocols for studying chromatin and its relation with transcriptional regulation are presented in a fourth section. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and up-to-date, Chromatin Protocols, Third Edition aims to help researchers in facilitating in-depth molecular analysis of various aspects of chromatin structure and function.
650 0 _aCytology.
650 1 4 _aCell Biology.
700 1 _aChellappan, Srikumar P.
_eeditor.
_4edt
_4http://id.loc.gov/vocabulary/relators/edt
710 2 _aSpringerLink (Online service)
773 0 _tSpringer Nature eBook
776 0 8 _iPrinted edition:
_z9781493924738
776 0 8 _iPrinted edition:
_z9781493924752
776 0 8 _iPrinted edition:
_z9781493944064
830 0 _aMethods in Molecular Biology,
_x1940-6029 ;
_v1288
856 4 0 _uhttps://doi.org/10.1007/978-1-4939-2474-5
912 _aZDB-2-PRO
999 _c7578
_d7578