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020 _a9781071624296
_9978-1-0716-2429-6
024 7 _a10.1007/978-1-0716-2429-6
_2doi
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082 0 4 _a581.35
_223
245 1 0 _aPlant Comparative Genomics
_h[electronic resource] /
_cedited by Alejandro Pereira-Santana, Samuel David Gamboa-Tuz, Luis Carlos Rodríguez-Zapata.
250 _a1st ed. 2022.
264 1 _aNew York, NY :
_bSpringer US :
_bImprint: Humana,
_c2022.
300 _aXI, 294 p. 63 illus., 54 illus. in color.
_bonline resource.
336 _atext
_btxt
_2rdacontent
337 _acomputer
_bc
_2rdamedia
338 _aonline resource
_bcr
_2rdacarrier
347 _atext file
_bPDF
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490 1 _aMethods in Molecular Biology,
_x1940-6029 ;
_v2512
505 0 _aOrthology Prediction and Phylogenetic Analysis Methods in Plants -- Species Tree Inference with SNP Data -- High-Throughput Evolutionary Comparative Analysis of Long Intergenic Non-Coding RNAs in Multiple Organisms -- NGS-Indel Coder v2.0: A Streamlined Pipeline to Code Indel Characters in Phylogenomic Data -- An SGSGeneloss-Based Method for Constructing a Gene Presence/Absence Table Using Mosdepth -- POInT: A Tool for Modeling Ancient Polyploidies Using Multiple Polyploid Genomes -- Searching for Homologous Genes Using Daisychain -- Detecting MicroRNAs in Plant Genomes with miRkwood -- Pangenome Analysis of Plant Transcripts and Coding Sequences -- Metagenomics Bioinformatic Pipeline -- Rhizosphere and Endosphere Bacterial Communities Survey by Metagenomics Approach -- Applying Synteny Networks (SynNet) to Study Genomic Arrangements of Protein-Coding Genes in Plants -- Plant In Situ Hi-C Experimental Protocol and Bioinformatic Analysis -- Isolation of Boechera stricta Developing Embryos for Hi-C -- Discovering the Secrets of Ancient Plants: Recovery of DNA from Museum and Archaeological Plant Specimens -- Use of Allele-Specific Amplification for Rapid Identification of Aromatic and Non-Aromatic Rice Germplasms -- Efficient Protein Extraction Protocols for NanoLC-MS/MS Proteomics Analysis of Plant Tissues with High Proteolytic Activity: A Case Study with Pineapple Pulp.
520 _aThis detailed book presents recent methodologies for the task of inspecting the genomic world of plants, extracting valuable information, and presenting it in a readable way. With a focus on bioinformatics tools, the volume explores phylogenetics and evolution, Omics analysis, as well as experimental procedures for trait characterization. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of vital expert implementation advice that will lead to successful results. Authoritative and practical, Plant Comparative Genomics serves as an ideal resource for researchers looking to implement comparative tools in order to explore their genomic data for their daily scientific work.
650 0 _aPlant genetics.
650 0 _aBiology
_xTechnique.
650 0 _aGenomics.
650 0 _aBioinformatics.
650 1 4 _aPlant Genetics.
650 2 4 _aGenomic Analysis.
650 2 4 _aBioinformatics.
700 1 _aPereira-Santana, Alejandro.
_eeditor.
_4edt
_4http://id.loc.gov/vocabulary/relators/edt
700 1 _aGamboa-Tuz, Samuel David.
_eeditor.
_4edt
_4http://id.loc.gov/vocabulary/relators/edt
700 1 _aRodríguez-Zapata, Luis Carlos.
_eeditor.
_0(orcid)0000-0002-4872-8231
_1https://orcid.org/0000-0002-4872-8231
_4edt
_4http://id.loc.gov/vocabulary/relators/edt
710 2 _aSpringerLink (Online service)
773 0 _tSpringer Nature eBook
776 0 8 _iPrinted edition:
_z9781071624289
776 0 8 _iPrinted edition:
_z9781071624302
776 0 8 _iPrinted edition:
_z9781071624319
830 0 _aMethods in Molecular Biology,
_x1940-6029 ;
_v2512
856 4 0 _uhttps://doi.org/10.1007/978-1-0716-2429-6
912 _aZDB-2-PRO
999 _c6157
_d6157