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| 001 | 978-1-0716-2962-8 | ||
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_a10.1007/978-1-0716-2962-8 _2doi |
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_aComputational Epigenomics and Epitranscriptomics _h[electronic resource] / _cedited by Pedro H. Oliveira. |
| 250 | _a1st ed. 2023. | ||
| 264 | 1 |
_aNew York, NY : _bSpringer US : _bImprint: Humana, _c2023. |
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| 300 |
_aXI, 262 p. 65 illus., 61 illus. in color. _bonline resource. |
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_atext _btxt _2rdacontent |
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_acomputer _bc _2rdamedia |
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_aonline resource _bcr _2rdacarrier |
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_bTable of contents navigation _2onix |
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_bSingle logical reading order _2onix |
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_bShort alternative textual descriptions _2onix |
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_bUse of color is not sole means of conveying information _2onix |
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_bUse of high contrast between text and background color _2onix |
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_bNext / Previous structural navigation _2onix |
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_bAll non-decorative content supports reading without sight _2onix |
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_atext file _bPDF _2rda |
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| 490 | 1 |
_aMethods in Molecular Biology, _x1940-6029 ; _v2624 |
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| 505 | 0 | _aDNA methylation data analysis using Msuite -- Interactive DNA methylation arrays analysis with ShinyÉPICo -- Predicting Chromatin Interactions from DNA Sequence using DeepC -- Integrating single-cell methylome and transcriptome data with MAPLE -- Quantitative comparison of multiple chromatin immunoprecipitation-sequencing (ChIP-seq) experiments with spikChIP -- A Guide To MethylationToActivity: A Deep-Learning Framework That Reveals Promoter Activity Landscapes from DNA Methylomes In Individual Tumors -- DNA modification patterns filtering and analysis using DNAModAnnot -- Methylome imputation by methylation patterns -- Sequoia: a framework for visual analysis of RNA modifications from direct RNA sequencing data -- Predicting pseudouridine sites with Porpoise -- Pseudouridine Identification and Functional Annotation with PIANO -- Analyzing mRNA epigenetic sequencing data with TRESS -- Nanopore Direct RNA Sequencing Data Processing and Analysis Using MasterOfPores -- Data Analysis Pipeline for Detection and Quantification of Pseudouridine (ψ) in RNA by HydraPsiSeq -- Analysis of RNA sequences and modifications using NASE -- Mapping of RNA modifications by direct Nanopore sequencing and JACUSA2. | |
| 520 | _aThis volume details state-of-the-art computational methods designed to manage, analyze, and generally leverage epigenomic and epitranscriptomic data. Chapters guide readers through fine-mapping and quantification of modifications, visual analytics, imputation methods, supervised analysis, and integrative approaches for single-cell data. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and thorough, Computational Epigenomics and Epitranscriptomics aims to provide an overview of epiomic protocols, making it easier for researchers to extract impactful biological insight from their data. | ||
| 532 | 8 | _aAccessibility summary: This PDF does not fully comply with PDF/UA standards, but does feature limited screen reader support, described non-text content (images, graphs), bookmarks for easy navigation and searchable, selectable text. Users of assistive technologies may experience difficulty navigating or interpreting content in this document. We recognize the importance of accessibility, and we welcome queries about accessibility for any of our products. If you have a question or an access need, please get in touch with us at accessibilitysupport@springernature.com. | |
| 532 | 8 | _aNo reading system accessibility options actively disabled | |
| 532 | 8 | _aPublisher contact for further accessibility information: accessibilitysupport@springernature.com | |
| 650 | 0 | _aEpigenetics. | |
| 650 | 0 | _aBiomathematics. | |
| 650 | 1 | 4 | _aEpigenetics. |
| 650 | 2 | 4 | _aMathematical and Computational Biology. |
| 700 | 1 |
_aOliveira, Pedro H. _eeditor. _0(orcid)0000-0003-3161-8367 _1https://orcid.org/0000-0003-3161-8367 _4edt _4http://id.loc.gov/vocabulary/relators/edt |
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| 710 | 2 | _aSpringerLink (Online service) | |
| 773 | 0 | _tSpringer Nature eBook | |
| 776 | 0 | 8 |
_iPrinted edition: _z9781071629611 |
| 776 | 0 | 8 |
_iPrinted edition: _z9781071629635 |
| 776 | 0 | 8 |
_iPrinted edition: _z9781071629642 |
| 830 | 0 |
_aMethods in Molecular Biology, _x1940-6029 ; _v2624 |
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| 856 | 4 | 0 | _uhttps://doi.org/10.1007/978-1-0716-2962-8 |
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